There are two displays formats: Wide and Short. The Short format gives the best overview - press the fourth button in the toolbar to activate.
The display shows the input mass values (first column) the fits within the sequence (second column) deviation (third column) modifications (fourth column - if a modification file has been defined), sequence position and finally the sequence with the two preceeding and following residues (enables you to check the cleavage specificity).
Peptide terminals that fits the enzyme cleavage specificity are marked with a green < or >. The E button in the toolbar switches between displaying only ‘Exact’ matches to the enzyme cleavage, or showing all possible peptides without regards to cleavage (C).
You are now ready to optimize the search.